Metadata Reference Guide » History » Sprint/Milestone 6
Steven (eSHIFT) Uggowitzer, 21 July 2022 08:53 AM
| 1 | 1 | Steven (eSHIFT) Uggowitzer | h1. Metadata Reference Guide |
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| 3 | {{>toc}} |
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| 5 | 4 | Steven (eSHIFT) Uggowitzer | h2. Data Elements |
| 6 | 1 | Steven (eSHIFT) Uggowitzer | |
| 7 | The default configuration of the One Health AMR System includes the following data elements, as defined by the World Health Organization list of priority pathogens and antibiotics: |
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| 9 | h3. Pathogens |
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| 11 | 5 | Steven (eSHIFT) Uggowitzer | table{margin-left: auto; margin-right: auto;}. |
| 12 | 1 | Steven (eSHIFT) Uggowitzer | | *Data Element* | *UID* | |
| 13 | 5 | Steven (eSHIFT) Uggowitzer | | Acinetobacter baumannii | | |
| 14 | | Pseudomonas aeruginosa | | |
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| 15 | | Klebsiella pneumonia | | |
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| 16 | | Escherichia coli | | |
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| 17 | | Serratia sp. | | |
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| 18 | | Proteus sp. | | |
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| 19 | | Providencia sp. | | |
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| 20 | | Morganella sp. | | |
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| 21 | | Enterococcus faecium | | |
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| 22 | | Staphylococcus aureus | | |
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| 23 | | Helicobacter pylori | | |
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| 24 | | Campylobacter | | |
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| 25 | | Salmonella sp. | | |
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| 26 | | Neisseria gonorrhoeae | | |
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| 27 | | Streptococcus pneumoniae | | |
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| 28 | | Haemophilus influenzae | | |
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| 29 | | Shigella sp. | | |
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| 30 | 1 | Steven (eSHIFT) Uggowitzer | |
| 31 | h3. Antibiotics |
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| 32 | 4 | Steven (eSHIFT) Uggowitzer | |
| 33 | 6 | Steven (eSHIFT) Uggowitzer | table{margin-left: auto; margin-right: auto;}. |
| 34 | 4 | Steven (eSHIFT) Uggowitzer | | *Data Element* | *UID* | |
| 35 | 5 | Steven (eSHIFT) Uggowitzer | | Amikacin | | |
| 36 | | Amoxicillin | | |
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| 37 | | Amoxicillin oral | | |
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| 38 | | Amoxicillin-clavulanic acid | | |
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| 39 | | Ampicillin | | |
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| 40 | | Ampicillin-sulbactam | | |
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| 41 | | Azithromycin | | |
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| 42 | | Aztreonam | | |
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| 43 | | Benzylpenicillin | | |
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| 44 | | Cefaclor | | |
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| 45 | | Cefadroxil | | |
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| 46 | | Cefalexin | | |
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| 47 | | Cefazolin | | |
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| 48 | | Cefepime | | |
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| 49 | | Cefiderocol | | |
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| 50 | | Cefixime | | |
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| 51 | | Cefixime | | |
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| 52 | | Cefotaxime | | |
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| 53 | | Cefotaxime | | |
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| 54 | | Cefoxitin | | |
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| 55 | | Cefpodoxime | | |
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| 56 | | Ceftaroline | | |
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| 57 | | Ceftazidime | | |
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| 58 | | Ceftazidime-avibactam | | |
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| 59 | | Ceftbiprole | | |
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| 60 | | Ceftibuten | | |
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| 61 | | Ceftobiprole | | |
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| 62 | | Ceftobripole | | |
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| 63 | | Ceftolozane-tazobactam | | |
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| 64 | | Ceftriaxone | | |
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| 65 | | Ceftriaxone | | |
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| 66 | | Cefuroxime | | |
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| 67 | | Chloramphenicol | | |
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| 68 | | Ciprofloxacin | | |
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| 69 | | Clarithromycin | | |
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| 70 | | Clindamycin | | |
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| 71 | | Colistin | | |
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| 72 | | Dalbavancin | | |
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| 73 | | Daptomycin | | |
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| 74 | | Delafloxacin | | |
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| 75 | | Doripenem | | |
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| 76 | | Doxycycline | | |
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| 77 | | Eravacycline | | |
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| 78 | | Ertapenem | | |
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| 79 | | Erythromycin | | |
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| 80 | | Fosfomycin | | |
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| 81 | | Fusidic acid | | |
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| 82 | | Gentamicin | | |
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| 83 | | Imipenem | | |
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| 84 | | Imipenem-relebactam | | |
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| 85 | | Lefamulin | | |
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| 86 | | Levofloxacin | | |
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| 87 | | Linezolid | | |
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| 88 | | Mecillinam oral | | |
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| 89 | | Meropenem | | |
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| 90 | | Meropenem-vaborbactam | | |
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| 91 | | Metronidazole | | |
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| 92 | | Minocycline | | |
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| 93 | | Moxifloxacin | | |
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| 94 | | Nalidixic Acid | | |
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| 95 | | Nitrofurantoin | | |
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| 96 | | Nitroxoline | | |
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| 97 | | Norfloxacin | | |
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| 98 | | Ofloxacin | | |
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| 99 | | Oritavancin | | |
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| 100 | | Piperacillin | | |
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| 101 | | Piperacillin-tazobactam | | |
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| 102 | | Quinupristin-dalfopristin | | |
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| 103 | | Rifampicin | | |
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| 104 | | Roxithromycin | | |
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| 105 | | Spectinomycin | | |
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| 106 | | Tedizolid | | |
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| 107 | | Teicoplanin | | |
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| 108 | | Telavancin | | |
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| 109 | | Telithromycin | | |
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| 110 | | Temocillin | | |
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| 111 | | Tetracycline | | |
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| 112 | | Ticarcillin | | |
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| 113 | | Ticarcillin-clavulanic acid | | |
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| 114 | | Tigecycline | | |
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| 115 | | Tobramycin | | |
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| 116 | | Trimethoprim | | |
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| 117 | | Trimethoprim-sulfamethoxazole | | |
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| 118 | | Vancomycin | | |